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https://dora.health.qld.gov.au/qldresearchjspui/handle/1/11142| Title: | Complete microbial genomes for public health in Australia and Southwest Pacific | Authors: | Baines, Sarah L. da Silva, Anders Gonçalves Carter, Glen Jennison, Amy Rathnayake, Irani Graham, Rikki Sintchenko, Vitali Wang, Qinning Rockett, Rebecca J. Timms, Verlaine J. Martinez, Elena Ballard, Susan Tomita, Takehiro Isles, Nicole Horan, Kristy A. Pitchers, William Stinear, Timothy P. Williamson, Deborah A. Howden, Benjamin P. Seemann, Torsten |
Issue Date: | 2019 | Publisher: | Cold Spring Harbor Laboratory | Source: | Baines, S. L., da Silva, A. G., Carter, G. P., Jennison, A., Rathnayake, I., Graham, R. M., Sintchenko, V., Wang, Q., Rockett, R. J., Timms, V. J., Martinez, E., Ballard, S., Tomita, T., Isles, N., Horan, K. A., Pitchers, W., Stinear, T. P., Williamson, D. A., Howden, B. P., & Seemann, T. (2020). Complete microbial genomes for public health in Australia and the Southwest Pacific. Microbial Genomics, 6(12). https://doi.org/10.1099/mgen.0.000471 | Journal: | Microbial genomics, 2020-12, Vol.6 (12) | Description: | Complete genomes of microbial pathogens are essential for the phylogenomic analyses that increasingly underpin core public health laboratory activities. Here, we announce a BioProject (PRJNA556438) dedicated to sharing complete genomes chosen to represent a range of pathogenic bacteria with regional importance to Australia and the Southwest Pacific; enriching the catalogue of globally available complete genomes for public health while providing valuable strains to regional public health microbiology laboratories. In this first step, we present 26 complete high-quality bacterial genomes. Additionally, we describe here a framework for reconstructing complete microbial genomes and highlight some of the challenges and considerations for accurate and reproducible genome reconstruction. | DOI: | 10.1101/829663 | Keywords: | Bacterial genetics;Databases, Genetic;High-throughput nucleotide sequencing;Australia | Type: | Journal article |
| Appears in Sites: | Forensic and Scientific Services Publications Queensland Health Publications |
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